rs27510841 SNP Detail

Summary

• ID
  rs27510841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118445046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCCAAGT GGCAGTGACT ATGTAGCTCT GGGATTCTCT
  GAGAGCCAGA CATTCAGTCA TGAGCTGTGC CCGGGGCTTT GCACTCAGAT TTCAGCCAAA
  W
  ATTTACTGTG TTGAACTTGC TGTATGCACA GGAGAGAGGT TGTCCTGGAA TAGTGACCAA
  GAGCCGTCTC CAGATTCAAT CTGGAATCTA ATGATGGTTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37688072	NES09208259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27510841					SNP	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688072	NES09208259	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118445046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap57	cilia and flagella associated protein 57			Intron
				Noncoding-Transcript-Variant
Rr598428	regulatory region 598428			1728 bp proximal