rs27510840 SNP Detail

Summary

• ID
  rs27510840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118445149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTGTGTT GAACTTGCTG TATGCACAGG AGAGAGGTTG
  TCCTGGAATA GTGACCAAGA GCCGTCTCCA GATTCAATCT GGAATCTAAT GATGGTTCAA
  W
  ATTCACCAGC ACAGGGGGTT CCAGCATGAA AACTCTTTGA CTGAGGTTGA TCAATACCCC
  CTGAGCCATG GGGGAGAGCA ACAGTGTCTT TTCCACAGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37688071	NES09208260	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T	T	A	T	T		T	A	A	T		A
ss147310850	ENSMUSSNP4726955	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
ss321283661	CHEV_4_118260557	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27510840					SNP	T	T	A	T	T	T	T	T	A	T	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688071	NES09208260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118445149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap57	cilia and flagella associated protein 57			Intron
				Noncoding-Transcript-Variant
Rr598428	regulatory region 598428			1625 bp proximal