rs27510833 SNP Detail

Summary

• ID
  rs27510833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118446027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATATGAC CTGGGCATGT
  GGTTTGCCAG TTTAATCTTA TGAATGTGTA CTGCTTATCT TTAAAGTCCC TAGCCCTGGT
  TTCTGCTCTT ACACTGTAGG AATGGTGGAT CACAGGACTG GCACACAGGA TGATCATGGG
  GCAGAGAGAC AGGCAGTGTG AGGGTGGAGG CCGTCAGGTG GCAGCAAGCA GGACAGCTTG
  W
  TGTTGTGAAT GGAGTTGTGA AGGGAGCTGT GATAGTCTGT ACCAAGGATG GGGATAGCCA
  GACCTTCCGA GGACCTTCGA TCCTGAGCCC TGAGTGCAGT CTGCCAAGGA ATTCTGCGTT
  CCTCCTCATT CTCCCCACTT CTTACCTTCT CTTCCATGTC TGTCTTAGTC ACGAGCACCT
  CTTCAGCAAA GCCCACCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37688064	NES09208180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27510833					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688064	NES09208180	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118446027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap57	cilia and flagella associated protein 57			Intron
				Noncoding-Transcript-Variant
Rr598428	regulatory region 598428			747 bp proximal