rs27510821 SNP Detail

Summary

• ID
  rs27510821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118447516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTTTTA AAAAGCAGGA
  TGCAAAAGAG TGACCATGTA GTATGATCTT TATGTCATAC ATGCAATGTA TACGAGGGAG
  GATGGGGTTA GCGTCTGAAT GATGCTGCTG TTATGAAGAC CTGACTTCTA ACATAAATAC
  ACACTGCTTC CATTATTAAA AACCATCTTA CCACAAAACT GAGTAGATCT GGAGGAAAGA
  Y
  AGGACTATTT TGTGGCACTT TACTTTCAAC TCAACATCCA GGCTCAGTAC AGAAATGCAT
  CATATTGAGA CATTCTTTTC TAATGAGTAC AGTGACCTAC AGGTAAGTGT GATGCTTTGA
  ATGAGAATGG CCCATAGGCT CATAGATTTG GACACTTGGA CTCCAGCTGG TGGAACTGTT
  TGGGGAGGAT TAGGAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37688052	NES09208160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27510821					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688052	NES09208160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118447516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap57	cilia and flagella associated protein 57			Intron
				Noncoding-Transcript-Variant
Rr598428	regulatory region 598428			291 bp distal