rs27510501 SNP Detail

Summary

• ID
  rs27510501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118850540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCAGA CACACCAAAA
  GACTGCATCC GATCCCATTA CAGATGGTTG TCAGCCACCA CGTGGTTGCT GGGAATTGAA
  CTTCCCCTAC TACAGAAGTA CAAAGATGGC ACAAAGATGA TCTACCACCA CGGGTGCCAC
  ACAAGTCAGC ACCCCCACAA TATCAACTAC CCAAGAACTG AGAGTCACAC CAACAAGTCC
  Y
  ACCTCCAACA GAAGACCAAG TGAAGGAGAA GGGGGCCAAA TGGGCCACAG CCCTGGGACC
  TGGGACCACA GTAAAGTCTC CCTTCCATTG ACTGAGAGAA AAACTAAAAC AGTGTATTAC
  TGACACAAAA GCAGGACTGG AAAAGCCAGT GGGCTGTGAC CCAGCAGAAA CAGGCCTACC
  CATAGCTACA GTGCCTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686033	NES09200145	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510501					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686033	NES09200145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118850540 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12865	predicted gene 12865	within coordinates
Rr598448	regulatory region 598448	1222 bp distal
Rr598449	regulatory region 598449	1340 bp distal
Rr598450	regulatory region 598450	1116 bp distal