rs27510099 SNP Detail

Summary

• ID
  rs27510099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117889607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAAGA GATTGGAAAC
  CATCTTAAGT TCCTCGAAGT TTTGAGCACA GAATCTGTTC AATGAGCCAG TCTCCTAGTC
  AGTGTCAGCT CCCAACTTGA CACAACTTTC AGAGTTATTT GGAGGTTGTC TCAGTCAGAA
  CGGCCTGTGG CCAGGTTCAT GAAATATTTT CCAAATTAGC AGTTGATATA GAAGAGTCCC
  R
  CTTACTGCTG GCATTACTAT ACATGTGCCT AGACTGGATA CAAGAAAGCT AACTGAGCAA
  GCTAGGAGGA GCAAGCCAGT TAGATGTGTA TGTATGTGTG TGTGTGTACA CATGCACACA
  TGTATGTGGT GTATGTGAAT TCGAGGGATG TGCAGGCCGT CGGGGCCAGA GTATATCCGG
  TGTCTTGCTC AATCACTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37690243	NES09218229	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27510099					SNP	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690243	NES09218229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117889607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598284	regulatory region 598284			1653 bp distal
Rr598285	regulatory region 598285			726 bp distal
Rr598286	regulatory region 598286			867 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant