rs27509947 SNP Detail

Summary

• ID
  rs27509947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117917214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAGTGGC CTACTGATGG ACCACTGAGG TGGCCTGATC
  AACAGGAAGG TCAAGCCATT CCCTGGGGGC TGCCTTCTGG AGACATGCAC TGGGAAGGAA
  K
  CACAGAGTAT TGGGGCGCTA GGAGCAATCA CAGCATAGAA GGGAGACAAG GGCGGGGCCT
  AGGCCAGGCT AGATGCTTGG TCCTGCAGAT CACATGGTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690091	NES09217661	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	T	G	G	G	G	G	G	G
ss45578968	mCV24294078	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss147298804	ENSMUSSNP3526578	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509947					SNP	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690091	NES09217661	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117917214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70335	predicted gene, 70335			1954 bp downstream
Rr598296	regulatory region 598296			1391 bp distal
Rr598297	regulatory region 598297			1007 bp proximal
Rr598298	regulatory region 598298			1933 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant