rs27509934 SNP Detail

Summary

• ID
  rs27509934
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117919081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGGACA CGTGACACAA
  CTTAGGGCTT CCACACGCGT GTGTACATGC ATGTACCTAC CCACCTGCAA ATGAGAATAC
  ACGAGTGCAT GCACAGGAAA TAAAGGGCTA GGGAAAGAGC AAAGATGGTC CCTGAAGTCC
  AAGAATGTCT GAGCTCTCCT GGGATCACAG ACTAAGAGTG TTAGAAGCCT TAAGAGTTAG
  S
  GTGGAAGGCC AGGTCTAGGG CTTTTACTAG GAATAGCTAG AAAGATGTGT AGGGAAGGTG
  CCTCAGCCAG TGTGAGGTTA GCAGGTCACA GTGGCAGGCT GGGAATGAGT AAGCAAAAGC
  ACTGAGGTAT GGGAAGTGAG GGGTGTGTGG CTTCAGGGGG GAAGGTCACC CCTAATTAAT
  ATCTTAGGGT TTCTTTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690076	NES09217564	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G		G	G	C	G		G
ss321281426	CHEV_4_117734489	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27509934					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690076	NES09217564	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117919081 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598297	regulatory region 598297			299 bp distal
Rr598298	regulatory region 598298			66 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant