rs27509570 SNP Detail

Summary

• ID
  rs27509570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118222070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTCCAAC CCGGCCACTA CGGCACTGCT GGAAGCAATG
  CTCACCCTGA GGAGGCAGGT CTCTTACCAG CTGGGGGTCA ATGTCCGCAA TGGACTTGGC
  R
  TGGACTGCCT CTAAGAGCTC CTCCAGCTCT GCCAGGGCCA GGCGCCCTCC AAGCCTTAGC
  CGGTCAGGCC CTGGTGGCTC CAGCAAGAAT AGGCGCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37688993	NES09209301	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	A	G	G	G	G	G	G	A
ss147306254	ENSMUSSNP1383071	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509570					SNP	G	A	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688993	NES09209301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118222070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598383	regulatory region 598383			1449 bp proximal
Szt2	SZT2 subunit of KICSTOR complex			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant