rs27508106 SNP Detail

Summary

• ID
  rs27508106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109722501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGATTC GTTTTGCTTT
  TTATTGTAGT GACCATGGGA GCCTTTTGTT TCTTTTTAAA TAAATGAACT TGTTTGTGAC
  AGGGTAGCTT GGGAAAGAAT AAGGTAGGCT TACAGCTGTG TCATTTTCCC CTCAAGTACT
  ACGGTGTCAA TGTGCTTTGA ACACATTGTT ACACAGGAAC AAATCTGTTG GTGTTAACCA
  K
  AAGAGTTGCA AGTTTCAAAC AAGATGGCGT TCTTTTGTAT CTTTAAATGA AGCACAAAAT
  GTGGACCTTT TCCCTCTGAC ATCTGCTTTT TGCTGTTAGG AAGTTTTTCA GTTAAACAGT
  AGAAAGCTCA AAATATTGGT AGGAATGAAG TCCTAGTTGG TTTTTGCCAG TTAGCAGGAT
  AAGCAAGGCA GTTGGTGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37677039	NES09048416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27508106					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677039	NES09048416	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109722501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12038	CpG island 12038	776 bp distal
Gm54141	predicted gene, 54141	1303 bp upstream
Lin7c	lin-7 homolog C, crumbs cell polarity complex component	Intron
Rr397174	regulatory region 397174	1205 bp downstream
Rr562499	regulatory region 562499	1345 bp distal
Rr562500	regulatory region 562500	1879 bp distal
Rr562501	regulatory region 562501	1293 bp distal
Rr562502	regulatory region 562502	256 bp distal
Tssr19303	transcription start site region 19303	1274 bp downstream