rs27507167 SNP Detail

Summary

• ID
  rs27507167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129818623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGCCACT ATGAACACAT CCGTCATCAA GTGCAGGAGC
  CTGGGACCAT GCCAGTCCCA CTCTCACCCC TGCTTGCTTC CTGTGGAGGT CGGATTAAGA
  R
  CGATCCCCAG AGACTCATAG ATGTGTGGCC TTGTTGGAGG AAGTATGGCA CTTGGGTTAG
  GCTTTGAGGT TTCAAAAGCT CACACTCAGG CCCTGGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717995	NES09179470	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	A		A	G	A		A
ss147454443	ENSMUSSNP5397984	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss321316088	CHEV_4_129602074	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27507167					SNP	A	A	G	G	G	A	G	G	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717995	NES09179470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129818623 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	1270 bp distal
Rr600384	regulatory region 600384	within coordinates
Rr600385	regulatory region 600385	1611 bp proximal
Rr600386	regulatory region 600386	1966 bp proximal