rs27507164 SNP Detail

Summary

• ID
  rs27507164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129818980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT GTTTGCTTCT TTCTTGTTCC
  K
  TTCTCTACCA AGCCTTTAGC TTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717992	NES09179436	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	G		G	T	T	T		T
ss147454479	ENSMUSSNP2056710	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss321316095	CHEV_4_129602431	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27507164					SNP	T	T	T	T	T	T	T	T	G	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717992	NES09179436	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129818980 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	1627 bp distal
Rr600384	regulatory region 600384	118 bp distal
Rr600385	regulatory region 600385	1254 bp proximal
Rr600386	regulatory region 600386	1609 bp proximal