rs27507158 SNP Detail

Summary

• ID
  rs27507158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129820249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA GGCAGAATGT TAGGAGGAGC
  Y
  GGCTGCATTG TTTTTCTGTT TGACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717986	NES09179366	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	C	C	C	C	C	T
ss45694646	mCV24826285	ABI	CRAMUS_MOUSE	f	SNP	T									C
ss46463141	mCV25339313	ABI	CRAMUS_MOUSE	r	SNP		A						G
ss147454521	ENSMUSSNP3024436	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27507158					SNP	T	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717986	NES09179366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129820249 () rs orientation: forward

Symbol	Name	Function Class
Rr600384	regulatory region 600384	1387 bp distal
Rr600385	regulatory region 600385	within coordinates
Rr600386	regulatory region 600386	340 bp proximal
Rr600387	regulatory region 600387	1783 bp proximal