rs27507157 SNP Detail

Summary

• ID
  rs27507157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129820351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAACA AACAAACAAA
  CAAACAAATT TTCTATCATA TATATTAATT GTGGAACAAG GAAAATACAG AAAGCAAAGG
  CAGAATGTTA GGAGGAGCCG GCTGCATTGT TTTTCTGTTT GACGTTGTAG AACGCCACTT
  TGAAAAAGCC TTTGAAAATA CTACCTCTCT CCATCTTAAC ACTCTTAAAA TAGCAAGTTG
  R
  CCGTGGCCAA ATCCGGAAAA CACTCTACCC GTGGTGAAGG TTAATGTCAC TGGGAGCTGT
  CACCTGCCCC AGTAGGACGT GACAGAAGAC ACTTCCCCTC AGTGGCACTC TGAAGAAGGC
  CGAATGCGGG AGGAAGCCAT TAGAGAAACC CCAGCTGATA AGCACTGTGC AAGAGGAGTA
  CGGTCCCCCT CAACAACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717985	NES09179367	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27507157					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717985	NES09179367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129820351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1949 bp proximal
Rr600384	regulatory region 600384	1489 bp distal
Rr600385	regulatory region 600385	within coordinates
Rr600386	regulatory region 600386	238 bp proximal
Rr600387	regulatory region 600387	1681 bp proximal