rs27507153 SNP Detail

Summary

• ID
  rs27507153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129820714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG CTGCTGAGCT GTAGGGAGTG
  Y
  TCCTTGATAA CACACAGAGC AAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717981	NES09179371	PERLEGEN	MM_PANEL2	f	SNP	C		C	C		C	T		T	C	C	T		C
ss45699254	mCV24826262	ABI	CRAMUS_MOUSE	f	SNP	C	C			T	C
ss147454541	ENSMUSSNP2677213	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss321316113	CHEV_4_129604165	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27507153					SNP	C	C	C	C	T	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717981	NES09179371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129820714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1586 bp proximal
Rr600384	regulatory region 600384	1852 bp distal
Rr600385	regulatory region 600385	within coordinates
Rr600386	regulatory region 600386	104 bp distal
Rr600387	regulatory region 600387	1318 bp proximal
Rr600388	regulatory region 600388	1697 bp proximal
Tssr39208	transcription start site region 39208	1846 bp upstream
Tssr39209	transcription start site region 39209	1868 bp upstream