rs27507152 SNP Detail

Summary

• ID
  rs27507152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129822033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA AGTGATATGT GCATGGGAGT
  R
  TCACCCATAG CTATGAAATC AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717978	NES09179306	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	G		G	A	A	G		A
ss45576144	mCV24826251	ABI	CRAMUS_MOUSE	f	SNP	A	A					G		A
ss147454559	ENSMUSSNP3435762	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321316117	CHEV_4_129605484	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27507152					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717978	NES09179306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129822033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	267 bp proximal
Rr600385	regulatory region 600385	837 bp distal
Rr600386	regulatory region 600386	1423 bp distal
Rr600387	regulatory region 600387	within coordinates
Rr600388	regulatory region 600388	378 bp proximal
Spocd1	SPOC domain containing 1	1009 bp upstream
Tssr39208	transcription start site region 39208	527 bp upstream
Tssr39209	transcription start site region 39209	549 bp upstream