rs27507151 SNP Detail

Summary

• ID
  rs27507151
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129823258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCCAGGG CTGGTGGACA
  GAGGACATTG TCTAGGTTCC AGGACTCTCT GTGTGACTTC TTGGCTACTG GAAGCTCCAG
  AAGTCTTTGT GGTACATCAC TGGACTTCCC AGATAGAGTA CTGGTCTGTA CAGAGGGGCC
  AGCAGGAATG GAAGAGGCCA GCAGCCCCAG CTTTAGACAA GCCACCACTG TCGAAGGAAT
  S
  GTTTCCCCAG AGGATCCTAC ACTCAGCAAA GAGGGGCTCA GTGCAAAGGG CCCGCCCCCA
  TCTCCAGTCC TGCCCCCTTT CCGAAGGAAA TGCAGGAAGT GTGGAATCTG TCCCCAGGAG
  GAGGAAAAGT CAGGTTTTTC CCTGAGGTTT GGTCAAAGAC CAGATGGGGA CCCTCCCGAG
  TGTGCTTCTC CAGAGGCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717977	NES09179307	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27507151					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717977	NES09179307	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129823258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	747 bp distal
Rr600387	regulatory region 600387	548 bp distal
Rr600388	regulatory region 600388	826 bp distal
Spocd1	SPOC domain containing 1	Coding-NonSynonymous
Tssr39208	transcription start site region 39208	695 bp downstream
Tssr39209	transcription start site region 39209	665 bp downstream