rs27507150 SNP Detail

Summary

• ID
  rs27507150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129824035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG TTTAGGGTAG GATGGCTGGG
  Y
  GTGGCACTTA ACAGAAGTAA ACTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717976	NES09179308	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	T		T	C	C	C		C
ss45602205	mCV24826249	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss147454569	ENSMUSSNP5790858	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321316118	CHEV_4_129607486	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27507150					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717976	NES09179308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129824035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1524 bp distal
Rr600387	regulatory region 600387	1325 bp distal
Rr600388	regulatory region 600388	1603 bp distal
Rr600389	regulatory region 600389	1776 bp proximal
Spocd1	SPOC domain containing 1	Intron
Tssr39208	transcription start site region 39208	1472 bp downstream
Tssr39209	transcription start site region 39209	1442 bp downstream