rs27506968 SNP Detail

Summary

• ID
  rs27506968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129888878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGGCA CAACCCCTTC
  TTCTTCCCCA AGCAGGCAGG AGGCTCTGCC ACCTCCTCCC TCCTGCCCAG CCTTTCTGAT
  GTGAGAGACG GCGGGTACCT GACTCAGTTC ATTTCATGTA TCAGGGTAGG GTGTATCTGT
  TGGCCAGAGG CATTGTCAGG GCCCAGAACA CACTGCTTGG GCTTCCTCCA CACCACTCTC
  Y
  GTGCCACACC CTAGAATAAA GAATAGGCTG GCACCGAGCT ACCAGACAGA GGGCAAGGTT
  TGTGGGGGGT GGGGACAAGC AGAAAGGGAT CCTCTGCCAG GAACTGGGGC AGGACAGGGA
  GTTAGGTTCA CCCTCTTTGG GGCATCCTTG AGAGAAGTCA GCAGAAGACA AAGCAGGATG
  GACCCAGGAT GATACCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717790	NES09177294	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss45640220	mCV25082791	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27506968					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717790	NES09177294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129888878 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgrb2	adhesion G protein-coupled receptor B2			Intron
				Noncoding-Transcript-Variant
Rr600410	regulatory region 600410			1497 bp distal
Rr600411	regulatory region 600411			391 bp distal