rs27505808 SNP Detail

Summary

• ID
  rs27505808
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119370175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AAATAGAGTG CAGGTCCTGG
  M
  TGTTGGAAGA GTTTCAGAGA GCTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37684141	NES09205590	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	A	C		C	C	A	A	A	C
ss45640911	mCV24266995	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					A	C
ss147331142	ENSMUSSNP2465341	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27505808					SNP	C	C	C	A	C	A	C	A	C	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684141	NES09205590	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119370175 () rs orientation: forward

Symbol	Name	Function Class
Rr598600	regulatory region 598600	1137 bp distal
Rr598601	regulatory region 598601	within coordinates