rs27502354 SNP Detail

Summary

• ID
  rs27502354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119977303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGCCA CCCTACTCTT
  CACAAACCTA TAAAATTCTG CATCCATAGG TCCCCGCTGT GTGCTAGATG TTTCTGCGTA
  TCTTTCTTAT CTATGTCTTA CACACAGTTG TTAAAATGAG TGCCCTCATT GCCTCATTCC
  CAGCCTGTGA ATGGTCTCGA GAACAAGGCC AGTGGAAACT TAAGATGTCT GTTTCTCCCT
  Y
  ATCCTGACCC CTCCTCTATA CAGACAGCTG CCGAGGATGT AGAGTTACTC TCAGAATACT
  TCGTGTTTCC TGCCCTAGTC TTCCCCAATC TAAACCGTTC CCAAGAGGCA AGTGGATAGT
  TGCCTCTTGT TGAGATTTTG TTTATCTGCA ATGCAATCTT CCATCAGGTC TGGAGTCTTT
  AAACTGCCCA ATGACCGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713982	NES09199526	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	C	C	T	C	C	C
ss147341165	ENSMUSSNP5703051	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502354					SNP	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713982	NES09199526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119977303 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598729	regulatory region 598729			923 bp distal
Rr598730	regulatory region 598730			218 bp proximal
Rr598731	regulatory region 598731			291 bp proximal
Rr598732	regulatory region 598732			337 bp proximal