rs27502346 SNP Detail

Summary

• ID
  rs27502346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119978818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTGTGA GGAGTGTGTA
  CTTGTGGGTG TGTAGGCATG AGGCATGAGA TAAACCCCCT ACTGCGACCT GGAGCTCCTA
  TCTGAGAGCC CCTCTTCGAG CCCATCCTGG TCACACCTCT CAGTCTGAGC AGACTCAGTG
  CTGTTGTCTC TCTGCCATCG ACCCACCTGC CCCTCCAGTG AGCACAGACA ACAAGCAGTC
  Y
  TTGCTGAGGC AATGGGGAGA CACATCCCCA TCTGTCTTGT GGTGGTCCAT GGCTTCTGAG
  GTAGACAGCT ACCAGAACTG CTTCTCCTGC TGTTCTTAAC GCCTCCAGTG TGGGATACCA
  AAGAGAGCTC AGTGCCCCTG GTGCGTTCTG AACCCAGGAA GGCAATGGTG GCCCCTGTTC
  CTCCCTCTTA CACGTGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37713974	NES09199534	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27502346					SNP	T	T	T	T	C	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713974	NES09199534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119978818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598730	regulatory region 598730			934 bp distal
Rr598731	regulatory region 598731			1203 bp distal
Rr598732	regulatory region 598732			1157 bp distal