rs27502271 SNP Detail

Summary

• ID
  rs27502271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120000051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACACTG TTATCTTTTG
  CATGATAGGG GGCCTGGGCT CTGATACATG ATCTCCATAT TTGATTAGCT GCCCATAGAG
  AGTCTGGGCC TCTATAGCCC TGGGATCCCT ATTGAGGCTT GGGTACCCCA GCTCAAATAC
  CCTGTACTCC TATAATGACC TCATCCACTT TAGGAAGATA CGAGTGCCAA TTGCCCTCTT
  Y
  CTGATGACAA AAATGGAGGT CCAGAGCCGG GAAGAGCTTG GCCTGAGGCC AGGTCTAGGA
  TTCCCATATT CTCCACAGAT CTACATGTAC CACCCCACCT AACCCCAGTC CCAAGTGCTA
  CTACCCAGCT CTTCTGCCCA GCTCTGCCTT TTTAGGAAAG GAAAAGAGCA GCCCTGGTGG
  CTGGCAGGCG GGCAGGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713898	NES09199004	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502271					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713898	NES09199004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120000051 () rs orientation: forward

Symbol	Name	Function Class
Rr598737	regulatory region 598737	1470 bp proximal