rs27501366 SNP Detail

Summary

• ID
  rs27501366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTTTCT GTCTTCTATG
  TGAGCTTTCT ACGACAGAGA AGGGTGAATG ATTTATTTAA ATGAATTTAT TTTCCAACTT
  AGGGGCATGC TCTGCATTTA AAAAAAATAT ACTCACTTTT GCTTTCCCTA CTGTGGTGAG
  GGTAAAATAT GATTCGGAAA TTAAAGAGCC TCATGTTTAT TACGTGTGCA GACCACTCCT
  Y
  TTGCTCAGCT GAACAGGAGG TATTTTGCCT CTCCCTTCGC TTCTTTCCCC AGCCCCTGCT
  TTCTTACAAG AGGTACAAAG GGACAATTAG CAAGTATGAG GTGGTGTATA TAGACTGTAT
  GCTTATACGA CACATTTCAT AGCCTCTGTA TCACTACACT TGCAAAACTA CCCACAGGAT
  GTTTTGGGCC TGCATTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37708888	NES09224405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C		C
ss321255942	CHEV_4_109961125	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27501366					SNP	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708888	NES09224405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145717 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1642 bp distal
Rr597419	regulatory region 597419	1141 bp distal
Rr597420	regulatory region 597420	503 bp distal
Rr597421	regulatory region 597421	1742 bp proximal
Tssr42786	transcription start site region 42786	1990 bp upstream
Tssr42787	transcription start site region 42787	1903 bp upstream
Tssr42788	transcription start site region 42788	1879 bp upstream
Tssr42789	transcription start site region 42789	1634 bp upstream
Tssr42790	transcription start site region 42790	986 bp upstream