rs27501365 SNP Detail

Summary

• ID
  rs27501365
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTATTA CGTGTGCAGA
  CCACTCCTTT TGCTCAGCTG AACAGGAGGT ATTTTGCCTC TCCCTTCGCT TCTTTCCCCA
  GCCCCTGCTT TCTTACAAGA GGTACAAAGG GACAATTAGC AAGTATGAGG TGGTGTATAT
  AGACTGTATG CTTATACGAC ACATTTCATA GCCTCTGTAT CACTACACTT GCAAAACTAC
  M
  CACAGGATGT TTTGGGCCTG CATTTTTAAG TGGCTTACCT GAGACCCTTT GCCTCATACC
  TATGAAGAAG GGTAACACCC TATGTATTTA ATAAACTTCA CAGTTTAATA AACTTTTCCA
  ATAAATGCAC AGAGGTAAAA AAAAAAATAG TCCATGTAGT GTTTAATTTT TGCCTGAAGT
  TGACAGTGGG CTAGAGTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	LG/J	MOLF/EiJ	SM/J
ss37708887	NES09224406	PERLEGEN	MM_PANEL2	f	SNP	C		A
ss321255946	CHEV_4_109961297	CHEVERUD	SCREENING_POP	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	LG/J	MOLF/EiJ	SM/J
rs27501365					SNP	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708887	NES09224406	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145889 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1814 bp distal
Rr597419	regulatory region 597419	1313 bp distal
Rr597420	regulatory region 597420	675 bp distal
Rr597421	regulatory region 597421	1570 bp proximal
Tssr42789	transcription start site region 42789	1806 bp upstream
Tssr42790	transcription start site region 42790	1158 bp upstream