rs27501363 SNP Detail

Summary

• ID
  rs27501363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110146303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCAAAC TAAGTTATAT
  TTCTGGACTT CAGAGTCTAA GTGTAAATGA GTTGGTGAAA AATTGCTAAA AAAGAAAGCT
  ACAACCCTTC ATTTTTAAAG GTCAAAACAA TTCTTTTCAA AGCATAGCTT CATGAACACA
  GGCAATAAAC ATATACACAC TCTATGAAAA TACAGATATA CCATGGAACA ATGTATCAGG
  Y
  ACATGATGTA AATCCTTGTG GTTACATTTA AATAAATCCA GCATTTAGAA ATAAAGGTGG
  ATGAAGAAGG AGCAGAAACA TGAAGCTTCA CTGGAGCTGC GCCCTTCAGG TAGAACAACA
  GTGAAGGAAG GAAACTTTAA AAACGATTTC CTTAGCACCT GCGTGGTGAG TCCTGTGAGC
  CACACTGGAG CCGTAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37708885	NES09224408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		T
ss321255949	CHEV_4_109961711	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27501363					SNP	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708885	NES09224408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110146303 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597419	regulatory region 597419	1727 bp distal
Rr597420	regulatory region 597420	1089 bp distal
Rr597421	regulatory region 597421	1156 bp proximal
Tssr42790	transcription start site region 42790	1572 bp upstream
Tssr42791	transcription start site region 42791	1778 bp downstream
Tssr42792	transcription start site region 42792	1811 bp downstream