rs27501362 SNP Detail

Summary

• ID
  rs27501362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110146447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACATAT ACACACTCTA
  TGAAAATACA GATATACCAT GGAACAATGT ATCAGGCACA TGATGTAAAT CCTTGTGGTT
  ACATTTAAAT AAATCCAGCA TTTAGAAATA AAGGTGGATG AAGAAGGAGC AGAAACATGA
  AGCTTCACTG GAGCTGCGCC CTTCAGGTAG AACAACAGTG AAGGAAGGAA ACTTTAAAAA
  Y
  GATTTCCTTA GCACCTGCGT GGTGAGTCCT GTGAGCCACA CTGGAGCCGT AGCACTTGCT
  GCACTGCACT CTAAGGATGA ATTCCCAGGT TCAATGCTCC AAACAGCTTG ATGTTCACAT
  ATAGGATATA GGTCTATGTG TCCCAAATTG ACAGCCAAAG TCATCCTGTC TGTATCTCAC
  CAATATCAAA ATATTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	LG/J	MOLF/EiJ	SM/J
ss37708884	NES09224409	PERLEGEN	MM_PANEL2	f	SNP	C		T
ss321255950	CHEV_4_109961855	CHEVERUD	SCREENING_POP	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	AKR/J	LG/J	MOLF/EiJ	SM/J
rs27501362					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708884	NES09224409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110146447 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597419	regulatory region 597419	1871 bp distal
Rr597420	regulatory region 597420	1233 bp distal
Rr597421	regulatory region 597421	1012 bp proximal
Tssr42790	transcription start site region 42790	1716 bp upstream
Tssr42791	transcription start site region 42791	1634 bp downstream
Tssr42792	transcription start site region 42792	1667 bp downstream