rs27501361 SNP Detail

Summary

• ID
  rs27501361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110146514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCTTGTG GTTACATTTA
  AATAAATCCA GCATTTAGAA ATAAAGGTGG ATGAAGAAGG AGCAGAAACA TGAAGCTTCA
  CTGGAGCTGC GCCCTTCAGG TAGAACAACA GTGAAGGAAG GAAACTTTAA AAACGATTTC
  CTTAGCACCT GCGTGGTGAG TCCTGTGAGC CACACTGGAG CCGTAGCACT TGCTGCACTG
  Y
  ACTCTAAGGA TGAATTCCCA GGTTCAATGC TCCAAACAGC TTGATGTTCA CATATAGGAT
  ATAGGTCTAT GTGTCCCAAA TTGACAGCCA AAGTCATCCT GTCTGTATCT CACCAATATC
  AAAATATTGG AGGAATATAT TGACACAATT CTGACAATTA CGTATATAAA AACAGCTCTC
  TTGGAAGAAA ATATTTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss37708883	NES09224410	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		T	C
ss321255951	CHEV_4_109961922	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs27501361					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708883	NES09224410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110146514 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597419	regulatory region 597419	1938 bp distal
Rr597420	regulatory region 597420	1300 bp distal
Rr597421	regulatory region 597421	945 bp proximal
Tssr42790	transcription start site region 42790	1783 bp upstream
Tssr42791	transcription start site region 42791	1567 bp downstream
Tssr42792	transcription start site region 42792	1600 bp downstream