rs27501360 SNP Detail

Summary

• ID
  rs27501360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110146541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATTTA GAAATAAAGG
  TGGATGAAGA AGGAGCAGAA ACATGAAGCT TCACTGGAGC TGCGCCCTTC AGGTAGAACA
  ACAGTGAAGG AAGGAAACTT TAAAAACGAT TTCCTTAGCA CCTGCGTGGT GAGTCCTGTG
  AGCCACACTG GAGCCGTAGC ACTTGCTGCA CTGCACTCTA AGGATGAATT CCCAGGTTCA
  R
  TGCTCCAAAC AGCTTGATGT TCACATATAG GATATAGGTC TATGTGTCCC AAATTGACAG
  CCAAAGTCAT CCTGTCTGTA TCTCACCAAT ATCAAAATAT TGGAGGAATA TATTGACACA
  ATTCTGACAA TTACGTATAT AAAAACAGCT CTCTTGGAAG AAAATATTTA CCTGATATTT
  CTATGCAGGT CATAGAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss37708882	NES09224411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G
ss321255952	CHEV_4_109961949	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs27501360					SNP	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708882	NES09224411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110146541 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597419	regulatory region 597419	1965 bp distal
Rr597420	regulatory region 597420	1327 bp distal
Rr597421	regulatory region 597421	918 bp proximal
Tssr42790	transcription start site region 42790	1810 bp upstream
Tssr42791	transcription start site region 42791	1540 bp downstream
Tssr42792	transcription start site region 42792	1573 bp downstream