rs27501358 SNP Detail

Summary

• ID
  rs27501358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110146915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTTCTA TGCAGGTCAT
  AGAAGGTGAA ATTTTTAGCA CCTCTTTTTT TCTCATCCAT ATTAATCACG GTATACTCTT
  TGAGCCCTAA ATTAACATTA GGTATATTTA AAAACATTCC GGCCATGTTT CCAAAATAGT
  AACTATACAT TATATCATAA ACAATTACCT GGTCTTCCTA GGATAAAAAA AAAAATGCAC
  R
  CGCTTTGTAT ATTGATCACT TCTGCAAAAA AAAAAAACCC TCCACTCTAA AGTCTTTCAA
  AGGAATCCTC AAACAAACGC ACAAATGTCC TCAGAGGCCT TTTCTCTAAA GACAAAGGCT
  GAATCCTATT GTTGGGAAAA GTCAACCTTA TTATCGCATT TCCAATAGTA CCATTCATCT
  TTCAGCGTGA GGGGCTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
ss37708880	NES09224413	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		A
ss321255953	CHEV_4_109962323	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
rs27501358					SNP	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708880	NES09224413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110146915 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597420	regulatory region 597420	1701 bp distal
Rr597421	regulatory region 597421	544 bp proximal
Tssr42791	transcription start site region 42791	1166 bp downstream
Tssr42792	transcription start site region 42792	1199 bp downstream