rs27501357 SNP Detail

Summary

• ID
  rs27501357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110148800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAACAC ATACAAATGG
  GAGACAAGAG CCGAAGGTGT AACTTTCCTT CTGAGTTTAT CTGACACCAT CTCAACTGAT
  GTAAATGACC AAAAGCTTAA AGCAAAGACA CCAAAAACAA AACAAAACAA ACAAACAAAA
  ACAAAAGGCA AAACCAAAAC TAAGTAAAAG TGCAGTCATA CTACCAGCTA TAAACAACCA
  Y
  AAGCTCAATC CAGACACATG TCTCTACCCA GAGCTCTTCT TTCCCCTTAA GATCTACCCT
  GAAGAGGAAC ACTTTTGCTG GATGCTGTTT GGGAGGCGTA CCTAACTTGG CATCTTCTTT
  GTAGCACTCT ATTCCAATTA ACCTGATCTT CGGCCAAGAA TAAAGAGGAA AATAAAGTTG
  AAATCTCCCA GAGATGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37708879	NES09224415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T
ss321255955	CHEV_4_109964208	CHEVERUD	SCREENING_POP	f	SNP					C		T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27501357					SNP	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708879	NES09224415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110148800 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597421	regulatory region 597421	841 bp distal
Rr597422	regulatory region 597422	379 bp proximal
Rr597423	regulatory region 597423	1109 bp proximal
Tssr42791	transcription start site region 42791	690 bp upstream
Tssr42792	transcription start site region 42792	671 bp upstream
Tssr42793	transcription start site region 42793	898 bp downstream
Tssr42794	transcription start site region 42794	1116 bp downstream