rs27501356 SNP Detail

Summary

• ID
  rs27501356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110149112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCTTTG TAGCACTCTA
  TTCCAATTAA CCTGATCTTC GGCCAAGAAT AAAGAGGAAA ATAAAGTTGA AATCTCCCAG
  AGATGGAGAA GAGGGTAATA TAAGGATATA GAGCTGCATT GTTATGTGGC AGTATCTTAA
  GAAGAATCTT ACTAAAAACA AAGCAAGCCC ATAGCGTTTA TTTTTCAGTG TGTCTACATC
  R
  GAAGCCAACA CACACACACA CACACACACA CACACACACA CAAACACACA TACCTGGCAT
  TTTTGTTTTT CTTGGCTGGA CAATATTGAA GCTCTGAACG TCCACATCTC TGGAGACACA
  AATGCCAATT CTTGTATTTT TCCAGTCCAT CCAGGCAGCA CTTAGCTACA CAAGATAGCA
  ACTGCCTCCT TTATCTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	SM/J
ss37708878	NES09224416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		A
ss321255956	CHEV_4_109964520	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	SM/J
rs27501356					SNP	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708878	NES09224416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110149112 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597421	regulatory region 597421	1153 bp distal
Rr597422	regulatory region 597422	67 bp proximal
Rr597423	regulatory region 597423	797 bp proximal
Tssr42791	transcription start site region 42791	1002 bp upstream
Tssr42792	transcription start site region 42792	983 bp upstream
Tssr42793	transcription start site region 42793	586 bp downstream
Tssr42794	transcription start site region 42794	804 bp downstream