rs27501355 SNP Detail

Summary

• ID
  rs27501355
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110149494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCTT TATCTTTAAG
  TCAAGTCTGC ATCATTTAAT AGCATTTAAC CTCCTCGCAT ATATTAAGTT TCAAGTGACA
  ATTTTTAACT GGGGAGTGAG AAGGAGGAGT TGCTCTCATC AAACTCTGGT TGTATGAAAT
  AAGCTAATTT GTACACTCAC CATATGTCTT AAACACTAAT TAAAAAATGT CACTTTCTTC
  W
  AACATTAAAA TGTAATCAGC CTAGTAAATA AAGTATTCTC GAGTTTTCTT GCCTTGGTGA
  TAATTTAAAG AGTGTTTATC TCAAGGTAAC CTTTCTAACT TGATTACCAA GGAAGACTCT
  AGATTTCAAA AGGGAAAAAG GAAATGCTAA GGGTCAGGGC TTTGGGGCAG GGAAAAGAGA
  AAACCACTAC TGTACGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	LG/J	MOLF/EiJ	SM/J
ss37708877	NES09224417	PERLEGEN	MM_PANEL2	f	SNP	A		T
ss321255957	CHEV_4_109964902	CHEVERUD	SCREENING_POP	f	SNP		A		T
SNP Consensus Information
SNP					Consensus Type	AKR/J	LG/J	MOLF/EiJ	SM/J
rs27501355					SNP	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708877	NES09224417	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110149494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elavl4	ELAV like RNA binding protein 4			Intron
				mRNA-UTR
Rr597421	regulatory region 597421			1535 bp distal
Rr597422	regulatory region 597422			within coordinates
Rr597423	regulatory region 597423			415 bp proximal
Tssr42791	transcription start site region 42791			1384 bp upstream
Tssr42792	transcription start site region 42792			1365 bp upstream
Tssr42793	transcription start site region 42793			204 bp downstream
Tssr42794	transcription start site region 42794			422 bp downstream