rs27498939 SNP Detail

Summary

• ID
  rs27498939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114891012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTAGA ATATAATTTT
  TATATTTATA TACATAGTAG AGAATAATAA AATCTGGCAG TCAAAATTAT GACCTCATAT
  ACTTTGTGGT AAAAACAATT TAAATCTGCT CTGCAATTCT GAACTATACC ATGGACTATT
  ATTTTTTACC ATCACAAATA TATTCATTTT CTTCCTCTTT GAGACATGAT AAGCTTAGTG
  Y
  ATTTTCATTG ACGTCTTTAC ATAGTAGTGT CAGCATAACA GAAAATCTCA AAGAAAACTT
  TCTTCAGTTA TGCCCATATG TCAGATATTG AGTTTGCTAA TCTGAATGAG TCACAACATC
  TTAAAAAAAC TTCAGCATTC TGTGTACTCA GATCTCACCA TAGAGATTCT AATAATACAG
  GCTTCCAAAT GACAGTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697862	NES09218747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498939					SNP	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697862	NES09218747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114891012 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597694	regulatory region 597694			1360 bp proximal
Stil	Scl/Tal1 interrupting locus			Intron
				Noncoding-Transcript-Variant