rs27498902 SNP Detail

Summary

• ID
  rs27498902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114893778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGCGT GCGCCACCAC
  TATCTGGCTG AATGACAGTA TTTTTTGGAG AAGCAAACAA ACCTTAAAGG CAGCATTGGA
  GAGTTCCTAC AGTAAGGTGA AGACGCTCCT TAGTGTGACT GAAGATGAAG GGCAACCTGT
  TGTTTTTGGA GCACAGTGGG AGGAGCAGGG GTAGAAGAAA ATTCAGTTAC AGACTTGCCA
  Y
  TGTGGACAGC TGATGCTGTG CTAGCAAGGC CTTCTTAAAC TTTCTGCAAG TGACTCCTTT
  AACCTGAGAG ATTTTAACAT GACCCTGTAA ATATGAATAT AAAGTAGGTA TGTAAAACAT
  TTAGTGATAA CAGAGATAAA AGATACTTAT AGTAATGGGA TGGGTCTGAT TGTTGAGTTT
  TACATAAAGA ATTAAATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37697824	NES09218786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss321275252	CHEV_4_114709186	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27498902					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697824	NES09218786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114893778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597694	regulatory region 597694			1231 bp distal
Rr597695	regulatory region 597695			1745 bp proximal
Rr597696	regulatory region 597696			1847 bp proximal
Stil	Scl/Tal1 interrupting locus			Intron
				Noncoding-Transcript-Variant