rs27498878 SNP Detail

Summary

• ID
  rs27498878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114896267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGTTGT GTGCTTGAGA
  GAGGGCAGTT CACAAAGCTT GCTCTCTATT AGAAGACTCC CGATCAGGTG GCTCACAACC
  ACTTACATTC CACCTACGAA GGCACACACG GGCACATAAA TAAATAATAA ACAAATCTTT
  TTTTTTTTAA TCTTCAAAGG GTTAGTGATT TTTAGATGCA TTCTTTTTCT TTCCATAGGG
  Y
  CAAGTGAACC ACCTACTAAG TAACGCCTCC CAAGAAACCG AAGAACCACC TACCAAAGCG
  GTAGTTACCA ACCGTGAATG CGCCAAGACC CAAAATACTC ACCATGCAAG GAAAAAAAGA
  CACAATTCAG GACTGGTAGA CAAAGATTGT GTACTCAGTG CAACTATTAA ACAGCTAAGG
  AGCCTAGGAG TGAAAATCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697800	NES09218648	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498878					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697800	NES09218648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114896267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597695	regulatory region 597695			506 bp distal
Rr597696	regulatory region 597696			621 bp distal
Stil	Scl/Tal1 interrupting locus			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site