rs27498516 SNP Detail

Summary

• ID
  rs27498516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114155709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTGGGAT CCTGTGTCTT GCTCTCTGAC AATAATCAAG
  ATCAGGCCCT GACAGGCTGG GTTTATTTGG GAGCATTGCA AGTTCTTCCT GCCAAACAAT
  R
  TTCTTGGAAA AGTCAGGGAG GAGAGCTATT ACAGGCAGGT AGGCCTTGAG CAATTACAAG
  AAAAAGTCAT GCAACCTGTT TTCATGTTCA GGTGTCTGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37700749	NES09219035	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498516					SNP	A	A	A	G	A	G	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700749	NES09219035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114155709 () rs orientation: forward

Symbol	Name	Function Class
Rr597538	regulatory region 597538	1905 bp distal
Rr597539	regulatory region 597539	1950 bp proximal