rs27498507 SNP Detail

Summary

• ID
  rs27498507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114156192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGCTCAC TCACAAACAA AACAAAACAA AAACTAAAAC
  TAAAAACAAA ACAAAACAAA CAAACAAAAT AACCCTCTGC TATCTCAAGC ACAGCTGCCC
  W
  CCTTGTAGCT TGTCTTTTCT TTGCCTTTTC CTGTCTATGT TAAACTTCAC ACAAGGACAC
  AGGGAAGAGC AAAGGAGATG CAGGTGCTTG TGGAAGTGAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37700740	NES09219044	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498507					SNP	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700740	NES09219044	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114156192 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	1467 bp proximal
Rr597540	regulatory region 597540	1541 bp proximal