rs27498478 SNP Detail

Summary

• ID
  rs27498478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114157776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACTACAGTC ATGAATATGC ACAATTACTG TCGAACTTTT
  ATTTTTAAAA GACTTTTATG ACCACCAGAG GGAGCCAAAC ACCTCCCACT TAACCCACAG
  R
  TTGGAAAAGA TACAGCAGAG AACAAGGAGG AAATCAGCAC TGCAGCTTAG ACATGGTCCC
  CCAAGTCACC TTTCATGCCT GGAACATTGC TAGTCACCCT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37700711	NES09218922	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	A	G
ss147266315	ENSMUSSNP6469539	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27498478					SNP	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700711	NES09218922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114157776 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	within coordinates
Rr597540	regulatory region 597540	22 bp distal