rs27498166 SNP Detail

Summary

• ID
  rs27498166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117125841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTTGTG TCATCTGCGC
  ATGTCAGCCA CCTCCGAGAC TATCCTACTT ACTATACAAG TCTGTGTGTT GACTTCATGC
  ATAATTGTGT CCAATGCTGA GGTCCCGCTC CGGAAATAAA CGCCGACACC TCCCTTCAAC
  CTTTATCTAT CCTGGGGGCT ACTAGCATGG CTTCGCCCTC CGATCCTGGG ATGGGAGTGG
  Y
  AGGGCAGGTC TCTGTGGGGC AGCCTTACAG TTACTTGGAC AAGTGTGATA GGCTGCTGAT
  TCCTACGGTG TTTGGTCTCT CTCTCTCTCT CTCTCCCTCT CTCTCTCTTT CCTCTCTGTT
  ACGTGGATGG CTCCAAGCCC AGAATTGTAT TAAAAAATAA TGTGGGGTTG AGGAGGGAGC
  TCAGTTGGTA AAGTGCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692997	NES09219213	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498166					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692997	NES09219213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117125841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14657	CpG island 14657	362 bp distal
Rr398416	regulatory region 398416	1614 bp upstream
Rr598100	regulatory region 598100	882 bp distal
Rr598101	regulatory region 598101	1144 bp distal
Rr598102	regulatory region 598102	428 bp distal
Rr598103	regulatory region 598103	1486 bp proximal
Rr598104	regulatory region 598104	1537 bp proximal
Rr598105	regulatory region 598105	1779 bp proximal
Tmem53	transmembrane protein 53	62 bp downstream