rs27498163 SNP Detail

Summary

• ID
  rs27498163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117126883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTTTAT ACTTGTTCTC
  AGAATTAAGT TTTGGTGTGG GGAGGGGGAA TGAGTGTGTG TCTGTGTGTC TGTGTGTCTT
  GTAGCCCAGG CTGCCTCAAT CTCACTATGT AGCTGAGGAT GATTTTGAGC TTGGGAGTCT
  CTGCCTCCCA GGTACTGGGA TAACAGCCTA TGCTAGCGTG CCTGCTTTGA ATTTTGAGTT
  Y
  GTGCCTGGAA GGTGCTGCAG AGTAGCAGAG GGAGGCTGGG GAGCAGGTCT GTGACCCCGC
  TCGCTGCAAG GACATAGCCC CGCAGTGGGA AGCCTTGTTC CTGCTTGGGC CTGAACCCAG
  AGAGGCTGTC TCTTGACCTT ACAGTCTGGG GATCTGAGGC AGACAGCAGC GAGAGCTGAG
  GATTTGGGTA TCTGGGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692994	NES09219083	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498163					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692994	NES09219083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117126883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14657	CpG island 14657	1404 bp distal
Rnf220	ring finger protein 220	1777 bp downstream
Rr398416	regulatory region 398416	572 bp upstream
Rr598100	regulatory region 598100	1924 bp distal
Rr598102	regulatory region 598102	1470 bp distal
Rr598103	regulatory region 598103	444 bp proximal
Rr598104	regulatory region 598104	495 bp proximal
Rr598105	regulatory region 598105	737 bp proximal
Tmem53	transmembrane protein 53	1104 bp downstream