rs27498111 SNP Detail

Summary

• ID
  rs27498111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117141257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCGCAG TGTAAACACA
  CCCAGAAAGA TGATACCTAC CCGAGGCCCG AGAGCCTCTG ACACCCATCT GCTGGCACAT
  CCCATGCAGA AATGGCTTTG CTTAAGCAGT GGGCCCTGTG CAGCCTGACC CATTCAGACA
  CTCCAGGAGC CCAAGAGCCA CAGGGTCCTG TTCCTTGCCA AGAAACCTAA GCAGCAGCTG
  Y
  AGTTGGTGTG AACAGTTGCA ACTGACAGCA GAGCTAATCT AGAACAGCCT TCCAGAACTG
  ACTCAGCAAG ACTGCCTTCT AAACCTGGTC ACACACCCTA GCATCCATGT GCCTCATTCC
  TGGGCTCATG AGCGCCATCC TTCATTCTTG AGAGGCTTCA GACCTGCTAG AGCCCCAGGA
  CAGAAATGCT CTGTGCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692942	NES09218705	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498111					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692942	NES09218705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117141257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598108	regulatory region 598108			within coordinates