rs27498110 SNP Detail

Summary

• ID
  rs27498110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117141374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGCCTG ACCCATTCAG
  ACACTCCAGG AGCCCAAGAG CCACAGGGTC CTGTTCCTTG CCAAGAAACC TAAGCAGCAG
  CTGCAGTTGG TGTGAACAGT TGCAACTGAC AGCAGAGCTA ATCTAGAACA GCCTTCCAGA
  ACTGACTCAG CAAGACTGCC TTCTAAACCT GGTCACACAC CCTAGCATCC ATGTGCCTCA
  K
  TCCTGGGCTC ATGAGCGCCA TCCTTCATTC TTGAGAGGCT TCAGACCTGC TAGAGCCCCA
  GGACAGAAAT GCTCTGTGCA ATGACAACTA AGGCTGCTTA CCTAGGGGGT GGCAACAGTT
  TGGTTTAACC CTCCTGATTT ACGCTCTGAC TTGTCTTCAG ACTGGTGGGC ACCATGCAAC
  AAGCTCAGAG GCACAGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692941	NES09218706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27498110					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692941	NES09218706	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117141374 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598108	regulatory region 598108			within coordinates