rs27497118 SNP Detail

Summary

• ID
  rs27497118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114327517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCATGC TCCCAGGGAT
  GCCCTGGTCT GCTTTTTCTT CAGGCTGTCT GTGGCCTCCT AAGCAACCCC TGGAGACCTG
  CAGAAACAGT GTTTTACTCC CATACTGAAT CCTCCCCCCA AAACAAACAT AGCCACTGCC
  AAGAGCCTTC AGGACTTGCA ATGAAAAACA GGTGTCTCCT GGAGACCTGT CAGCCAGGCA
  Y
  AGAAACTTGG GGTCACTACC TGGGGAGAGG GAAGAGGAAT GGCAGCAAGG CACGCCATAC
  ACCTGCAGCT CCTAGAGTCC AGCTTCAGGG GCATCAGCCC CTTGTGTCAT AGGAAACTGC
  CTCCTACACT GCTCCCAGGA GTCAGAGCAT CAGGATACCC TTACTCAGCA TGGGCAGATA
  CACAAAGACA GATACACGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699847	NES09213923	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497118					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699847	NES09213923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114327517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597578	regulatory region 597578			1860 bp distal
Rr597579	regulatory region 597579			1733 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant
Tssr42814	transcription start site region 42814			581 bp downstream