rs27497110 SNP Detail

Summary

• ID
  rs27497110
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114328546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTATACC CAGGGCATTG
  GGCACAAAGG ACTATACCTG CCTAGTTCAC TTCTGATTCT CCAGCATCCC ACCTACATCC
  TAGTATACTC AGGGTCCCGT CAGTGCACAC CAGAAAAGAA ATGGAGTGGA GTGGAGAGAT
  GGCTCAGCAG TTAAGAACAC TAGCTGTTCT TCCAGAAGAA CTGAGTTCAA TGGAGTATTC
  W
  TACAAGCCCT GCATGTTCAC CTCATGGCCC TTGCAGGAAA GGTTTATCTC CTGTCACCTA
  TTCTCATCCT CCTACACTGA GACTCTGTAG AGGGGCCAGG TTCCTATCCC CTGAGTAGCT
  TGTCTTGGGA GGAGCCCAGG CCAATAGGTG CTATAGCAAT CATCTCTATT TGTCCTGGAG
  CCAGTTTCTT GCTCCCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699839	NES09213845	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497110					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699839	NES09213845	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114328546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			704 bp proximal
Rr597580	regulatory region 597580			992 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant
Tssr42814	transcription start site region 42814			444 bp upstream