rs27497109 SNP Detail

Summary

• ID
  rs27497109
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114329188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGCCCA GCCACCATTA
  GTTAGGACCA GTCATTTTTT CCTCTCCTTT TTATTTCTAT TTTTTTCCCC ATCCAGTGAG
  CACTCCACTG GATTTGCAGG ACCCAGGTGA GTATCACTCT CCTATTAGAA ATGCTGTCAG
  TTTTCATGGC TTCAGGTGGC GCTTGAGTTA CTCCCAAGCA TACTACTTCC AGCAGGGACA
  W
  CCTCTGGAAG CTTTGTCCAT TCCCTGGTGT GGAGAATGAG AGGGACAGAG AAACCAGAGA
  ACTGAGGCCT AGCATAGAGA GGTGAGGCAT AGCAGGAACA AAACTACTGT CCCTAAGTAT
  CCACCAGGCT GTCCTGTAGC AGAGAAGACA GTGTCACAGA AGCTGGAACT AGCCCAGTGG
  GCAAAGAGCA AAGTGAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37699838	NES09213825	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A	A	A		T	A	A		A
ss321274178	CHEV_4_114144596	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27497109					SNP	A	A	A	T	A	T	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699838	NES09213825	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114329188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			62 bp proximal
Rr597580	regulatory region 597580			350 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant
Tssr42814	transcription start site region 42814			1086 bp upstream