rs27497107 SNP Detail

Summary

• ID
  rs27497107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114330436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGCTT GCTCGTGCCC
  ACTTGCTAAG TTCAGGGCAG GCTGTTTGCT AGGTGACCTC TAGCCTCTGA TCCCCCAGGT
  CTCCCTCGCC CACTTCTTCC AAGAAATGCT AAGAACTGGG CCTGGGGAGA AGAATAAAAA
  ACACATTGAG CCCAACCTCC CTGAGGATGA CGCCAGAGCA CTGAGGCTGC GCACTGTGTA
  Y
  AGACTCTGTT CTCTCCAGCA AAGCATCGCC TGTAACTCCT ACTGTGTGCA GCCAGAGCCT
  GGGCCTGAGG GAATGGGACC AGCTGTTTGA ACGTGAGGCA CCAATGCCAC CTAGGGCGCA
  TACTTATCTT GTGCTTGACT GACACCGTTT TGAGACTGGA AATAATTTAT AAATTAGGGG
  TTCCTCATCA TTTTGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37699836	NES09213810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C		T	C	C		C
ss321274180	CHEV_4_114145844	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27497107					SNP	C	C	C	T	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699836	NES09213810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114330436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			742 bp distal
Rr597580	regulatory region 597580			877 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant