rs27497104 SNP Detail

Summary

• ID
  rs27497104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114330536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAATGCT AAGAACTGGG
  CCTGGGGAGA AGAATAAAAA ACACATTGAG CCCAACCTCC CTGAGGATGA CGCCAGAGCA
  CTGAGGCTGC GCACTGTGTA CAGACTCTGT TCTCTCCAGC AAAGCATCGC CTGTAACTCC
  TACTGTGTGC AGCCAGAGCC TGGGCCTGAG GGAATGGGAC CAGCTGTTTG AACGTGAGGC
  R
  CCAATGCCAC CTAGGGCGCA TACTTATCTT GTGCTTGACT GACACCGTTT TGAGACTGGA
  AATAATTTAT AAATTAGGGG TTCCTCATCA TTTTGTTCCA GAACTTGCAA ATTATGTAGC
  TGATCCTAAA GGACAGACAT GGGCGGAAGG AGGAGGGGAC TGCCCTCAGG AGTGTGGTTT
  CCTGGAGGAC ACAAAGTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37699833	NES09213816	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27497104					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699833	NES09213816	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114330536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			842 bp distal
Rr597580	regulatory region 597580			977 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant