rs27497102 SNP Detail

Summary

• ID
  rs27497102
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114330798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTATA AATTAGGGGT
  TCCTCATCAT TTTGTTCCAG AACTTGCAAA TTATGTAGCT GATCCTAAAG GACAGACATG
  GGCGGAAGGA GGAGGGGACT GCCCTCAGGA GTGTGGTTTC CTGGAGGACA CAAAGTAGTA
  ACAAGAGTCC ATGTTCACCA ATGGAACAGG AACCATGGGG ACATACAAAT GGATGTCATC
  S
  GTGTGTGACT TTCTTTCTTT TAGGGAACAC ACCAGGAAGC CCTGTCCCTA GTGAATCCAG
  CAGATTCAAT GACTTGGTGA ATCTTTGACT TGTTTTCTAG TTTGTTTTTT CATTTTGTTT
  TTTTCCTAAG AAGAAAGATA CTTGCTGCCT GAGGTCTGTG CCTTTCTATC AGCTCTGTCC
  TGTCTATTAT ATCTGATGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37699831	NES09213744	PERLEGEN	MM_PANEL2	f	SNP	G			C	G	G	G	G		C	G	C		G
ss147269414	ENSMUSSNP3620324	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss321274184	CHEV_4_114146206	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27497102					SNP	G	G	G	C	G	G	G	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699831	NES09213744	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114330798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			1104 bp distal
Rr597580	regulatory region 597580			1239 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant