rs27497024 SNP Detail

Summary

• ID
  rs27497024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGAGAA GGCCATTCAT
  CACAGAACCG TGCAAGCCCC TGTTCAATAA TAAACAGATG TATTACGGAG AAAGGAAGGG
  ATGGGCGTCA GCCCAGTGAT TCATTTGTCT CCCTCTCGAA GTCACCTTCA TCCCAGGCTT
  CAGAGGGCAG GCACGGGCGC TTTGATGCAG AGGCATCATG TCAGGGAAAT GGAAACATTT
  Y
  ACATTGTAAA TCCTCAGGTT GTCAGAGAAA CCCTAATGAG AAAGGAGACT GGCAAGGAGC
  ACCCAGGGCT GCTTGAGGAG GGGGTGCTCA AGACTCTGAG AGACAGAAAT ATAGCCTGTC
  ACTCTGTTAA CACGCTTTCT TCACTGTACC CATGGGAGGC AGGTCATTCT CCCAGGGTCC
  CACTGGGCTG GAAGCCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699751	NES09230605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C		C	C	C	C
ss147269848	ENSMUSSNP6678553	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497024					SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699751	NES09230605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			770 bp distal
Rr597586	regulatory region 597586			710 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant